Each results file has 24 columns. The overall structure is;
1. 4 SNP information columns,
2. 4 posterior probability columns,
3. 8 Bayes factor columns,
4. 8 columns of p-values.
For each of the 24 columns we now list the column name in short hand followed by a short description.
1. rs - the rs identifying number for each SNP.
2. chr - the chromosome number (1-22).
3. pos - the location on the chromosome according to build 36 of the human genome.
4. MAF - the minor allele frequency of the SNP (from all samples).
5. Null - the posterior probability of no association.
6. JustS - the posterior probability of association with just the S phenotype.
7. JustD - the posterior probability of association with just the D phenotype.
8. BothSandD - the posterior probability of association with the S and D phenotypes.
9. log10_BF.TNT.PARC.Sum - the log to the base 10 of the Bayes factor of the S (Sum) phenotype for all samples (TNT and PARC (that is CAP and PRINCE) ).
10. log10_BF.TNT.Sum - the log to the base 10 of the Bayes factor of the S (Sum) phenotype for just the TNT samples.
11. log10_BF.PRINCE.Sum - the log to the base 10 of the Bayes factor of the S (Sum) phenotype for just the PRINCE samples (a subset of PARC).
12. log10_BF.CAP.Sum - the log to the base 10 of the Bayes factor of the S (Sum) phenotype for just the CAP samples (a subset of PARC).
13. log10_BF.TNT.PARC.Delta - the log to the base 10 of the Bayes factor of the D (Delta) phenotype for all samples (TNT and PARC (that is CAP and PRINCE) ).
14. log10_BF.TNT.Delta - the log to the base 10 of the Bayes factor of the D (Delta) phenotype for just the TNT samples.
15. log10_BF.PRINCE.Delta - the log to the base 10 of the Bayes factor of the D (Delta) phenotype for just the PRINCE samples (a subset of PARC).
16. log10_BF.CAP.Delta - the log to the base 10 of the Bayes factor of the D (Delta) phenotype for just the CAP samples (a subset of PARC).
17. log10_P.TNT.PARC.Sum - the log to the base 10 of the p-value of the S (Sum) phenotype for all samples (TNT and PARC (that is CAP and PRINCE) ).
18. log10_P.TNT.Sum - the log to the base 10 of the p-value of the S (Sum) phenotype for just the TNT samples.
19. log10_P.PRINCE.Sum - the log to the base 10 of the p-value of the S (Sum) phenotype for just the PRINCE samples (a subset of PARC).
20. log10_P.CAP.Sum - the log to the base 10 of the p-value of the S (Sum) phenotype for just the CAP samples (a subset of PARC).
21. log10_P.TNT.PARC.Delta - the log to the base 10 of the p-value of the D (Delta) phenotype for all samples (TNT and PARC (that is CAP and PRINCE) ).
22. log10_P.TNT.Delta - the log to the base 10 of the p-value of the D (Delta) phenotype for just the TNT samples.
23. log10_P.PRINCE.Delta - the log to the base 10 of the p-value of the D (Delta) phenotype for just the PRINCE samples (a subset of PARC).
24. log10_P.CAP.Delta - the log to the base 10 of the p-value of the D (Delta) phenotype for just the CAP samples (a subset of PARC).